This Data Supplement contains the complete gene contents of the six conditionally independent ("significant") sets highlighted in the manuscript text, Figure 2 and Table 3.
Column 1: Gene set name (as Extended Data Tables 11 and 12).
Column 2: GeneID from Entrez (http://www.ncbi.nlm.nih.gov/gene) [1]
This format is readable by MAGMA [2] and can be readily used in gene set analyses (see http://ctg.cncr.nl/software/magma)

1: Maglott D, Ostell J, Pruitt KD, Tatusova T. 2011. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Research. 39:D52-D57. doi:10.1093/nar/gkq1237.
2: de Leeuw C, Mooij J, Heskes T, Posthuma D. 2015. MAGMA: Generalized gene-set analysis of GWAS data. PLoS Computational Biology 11(4): e1004219. doi:10.1371/journal.pcbi.1004219